miRBase entry: aae-mir-307

Stem-loop aae-mir-307


Accession
MI0013501
Description
Aedes aegypti aae-mir-307 precursor miRNA
Gene family
MIPF0000293; mir-67


Sequence

1294 reads, 68 reads per million, 2 experiments
cuaguuucccggcagucgaucacucacucaaccugggugugaugcuuauuugaaucauCACAACCUCCUUGAGUGAGCGAccgauugaugg
........(((.((((((.((.(((((((((...((.(((((((.((.....)).))))))).))...))))))))).)).)))))).)))

Structure
cuaguuuc   g      a  a         ccu  g       c  a 
        ccg cagucg uc cucacucaa   gg ugugaug uu u
        ||| |||||| || |||||||||   || ||||||| || u
        ggu guuagc AG GAGUGAGUU   CC ACACuac aa u
--------   a      c  C         CCU  A       u  g 


Annotation confidence Not enough data
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Comments
This miRNA was identified independently in Aedes aegypti [1] and in the closely related Aedes albopictus, for which there was no genome sequence [2]. The latter reads were therefore also mapped to the Aedes aegypti genome [2].

Genome context
supercont1.16: 1859419-1859509 [-]

Database links

Mature aae-miR-307

Accession MIMAT0014296
Description Aedes aegypti aae-miR-307 mature miRNA
Sequence 59 - CACAACCUCCUUGAGUGAGCGA - 80
Evidence experimental
454 [1], Illumina [2]

References

  1. PubMed ID: 19961592
    Direct sequencing and expression analysis of a large number of miRNAs in Aedes aegypti and a multi-species survey of novel mosquito miRNAs
    Li S, Mead EA, Liang S, Tu Z
    BMC Genomics (2009) 10:581

  2. PubMed ID: 20167119
    Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus
    Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR
    BMC Genomics (2010) 11:119