miRBase entry: aae-mir-2943-2

Stem-loop aae-mir-2943-2


Accession
MI0013508
Description
Aedes aegypti aae-mir-2943-2 precursor miRNA
Gene family
MIPF0001056; mir-2943

Literature search
2 open access papers mention aae-mir-2943-2
(9 sentences)

Sequence

78 reads, 4 reads per million, 2 experiments
gaugUUAAGUAGGCACUUGCAGGCAAAuuuguagcuuuaauaugauugacugcuuuuuccuacuuuacauu
(((((.(((((((.....((((.(((..(((((.......)))))))).)))).....))))))).)))))

Structure
     U       CACUU    G   Au     gc 
gaugU AAGUAGG     GCAG CAA  uugua  u
||||| |||||||     |||| |||  |||||  u
uuaca uucaucc     cguc guu  aguau  u
     u       uuuuu    a   --     aa 


Annotation confidence Not enough data
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Genome context
supercont1.348: 481079-481149 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from aae-mir-2943-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature aae-miR-2943

Accession MIMAT0014301
Description Aedes aegypti aae-miR-2943 mature miRNA
Sequence 5 - UUAAGUAGGCACUUGCAGGCAAA - 27
Evidence experimental
454 [1]

References

  1. PubMed ID: 19961592
    Direct sequencing and expression analysis of a large number of miRNAs in Aedes aegypti and a multi-species survey of novel mosquito miRNAs
    Li S, Mead EA, Liang S, Tu Z
    BMC Genomics (2009) 10:581