miRBase entry: ghr-MIR167a

Stem-loop ghr-MIR167a


Accession
MI0013539
Description
Gossypium hirsutum ghr-MIR167a precursor miRNA
Gene family
MIPF0000023; MIR167_1

Literature search
22 open access papers mention ghr-MIR167a
(108 sentences)

Sequence

gggaaaaagUGAAGCUGCCAGCAUGAUCUAucuuccguuaguaagaugcggaugcuauauugcuaacccuagcuaggucaugcugcgacagccucacuccuuccu
(((((..(((((.(((((((((((((((((.((...((((((((...((....))....))))))))...)).)))))))))))).).)))).)))))..)))))

Structure
     aa     A    - -            u  ucc        -gau  g 
gggaa  agUGA GCUG C CAGCAUGAUCUA cu   guuaguaa    gc g
|||||  ||||| |||| | |||||||||||| ||   ||||||||    ||  
uccuu  ucacu cgac g gucguacuggau ga   caaucguu    cg a
     cc     c    a c            c  ucc        auau  u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature ghr-miR167a

Accession MIMAT0014332
Description Gossypium hirsutum ghr-miR167a mature miRNA
Sequence 10 - UGAAGCUGCCAGCAUGAUCUA - 30
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 19889219
    Genome-wide analysis reveals rapid and dynamic changes in miRNA and siRNA sequence and expression during ovule and fiber development in allotetraploid cotton (Gossypium hirsutum L.)
    Pang M, Woodward AW, Agarwal V, Guan X, Ha M, Ramachandran V, Chen X, Triplett BA, Stelly DM, Chen ZJ
    Genome Biol (2009) 10:R122