miRBase entry: cqu-mir-125

Stem-loop cqu-mir-125


Accession
MI0013562
Description
Culex quinquefasciatus cqu-mir-125 precursor miRNA
Gene family
MIPF0000033; mir-10


Sequence

uuaguuuuguuucugcugauUCCCUGAGACCCUAACUUGUGAcuauaguugaaguuUCACAAGUUUUGAUCUCCGGUAUuagcggucgagauuca
..(((((((...((((((((..((.((((.(..(((((((((((........))..)))))))))..).)))).)).)))))))).)))))))..

Structure
uu       uuu        UC  U    C CU         --  aua 
  aguuuug   cugcugau  CC GAGA C  AACUUGUGA  cu   g
  |||||||   ||||||||  || |||| |  |||||||||  ||    
  uuagagc   ggcgauUA  GG CUCU G  UUGAACACU  ga   u
ac       --u        -U  C    A UU         uu  agu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
supercont3.4: 280955-281049 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from cqu-mir-125
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cqu-miR-125-5p

Accession MIMAT0014355
Description Culex quinquefasciatus cqu-miR-125-5p mature miRNA
Sequence 21 - UCCCUGAGACCCUAACUUGUGA - 42
Evidence experimental
Illumina [1]

Mature cqu-miR-125-3p

Accession MIMAT0014356
Description Culex quinquefasciatus cqu-miR-125-3p mature miRNA
Sequence 57 - UCACAAGUUUUGAUCUCCGGUAU - 79
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20167119
    Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus
    Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR
    BMC Genomics (2010) 11:119