Stem-loop cqu-mir-9

Accession

MI0013581

Description

Culex quinquefasciatus cqu-mir-9 precursor miRNA

Gene family

MIPF0000014; mir-9

Sequence

augcguauaauuuccggcugaaUCUUUGGUAUUCUAGCUGUAGAauguugagcuuguuacgguaucuucUAAAGCUUUAGUACCAGAGGUCcaacugggaauugcuugcug
..(((..((((((((((.((.((((((((((((..((((.(((((.((...(((......))))).))))).))))..)))))))))))).)).))))))))))..)))..

Structure

au   ua          c  a            CU    G     u  uga   ug 
  gcg  uaauuuccgg ug aUCUUUGGUAUU  AGCU UAGAa gu   gcu  u
  |||  |||||||||| || ||||||||||||  |||| ||||| ||   |||   
  cgu  guuaaggguc ac UGGAGACCAUGA  UCGA AUcuu ua   ugg  u
gu   uc          a  C            UU    A     c  ---   ca 

Annotation confidence Not enough data

Genome context

supercont3.83: 64711-64821 [+]

Mature cqu-miR-9-5p

• Accession: MIMAT0014380
• Description: Culex quinquefasciatus cqu-miR-9-5p mature miRNA
• Sequence: 23 - UCUUUGGUAUUCUAGCUGUAGA - 44
• Evidence: experimental ; Illumina [1]

Mature cqu-miR-9-3p

• Accession: MIMAT0014381
• Description: Culex quinquefasciatus cqu-miR-9-3p mature miRNA
• Sequence: 70 - UAAAGCUUUAGUACCAGAGGUC - 91
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20167119
   Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus
   Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR
   BMC Genomics (2010) 11:119