Stem-loop sequence cqu-mir-12

Accession

MI0013591 (change log)

Description

Culex quinquefasciatus miR-12 stem-loop

Gene family

MIPF0000181; mir-12

Literature search

1 open access papers mention cqu-mir-12
(2 sentences)

Stem-loop

   -----aa    -----     --c         cgu    c  aaagaaga  a  g 
5'        gaua     accug   uggugcuca   gucc ga        ag au a
          ||||     |||||   |||||||||   |||| ||        || ||  
3'        cugu     uggac   auuaugagu   uagg cu        uc ua a
   cuuauag    gguca     uac         ---    -  --gucccg  c  a 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (CpipJ1): supercont3.57: 562944-563041 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from cqu-mir-12

• cqu-mir-283: supercont3.57: 559440-559549 [+]
• cqu-mir-1889: supercont3.57: 562539-562677 [+]
• cqu-mir-12: supercont3.57: 562944-563041 [+]

Database links

• miRBase Tracker:MI0013591

Mature sequence cqu-miR-12-5p

• Accession: MIMAT0014394
• Previous IDs: cqu-miR-12*
• Sequence: 39 - aagaaugaaaauccugcccugucggau - 65
• Evidence: experimental; Illumina [1]

Mature sequence cqu-miR-12-3p

• Accession: MIMAT0014395
• Previous IDs: cqu-miR-12
• Sequence: 66 - ugaguauuacaucagguacuggu - 88
• Evidence: experimental; Illumina [1]

References

1. PMID:20167119 "Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus" Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR BMC Genomics. 11:119(2010).