miRBase entry: cqu-mir-12

Stem-loop cqu-mir-12


Accession
MI0013591
Description
Culex quinquefasciatus cqu-mir-12 precursor miRNA
Gene family
MIPF0000181; mir-12

Literature search
1 open access papers mention cqu-mir-12
(2 sentences)

Sequence

aagauaaccugcuggugcucacgugucccgaaaagaagAAGAAUGAAAAUCCUGCCCUGUCGGAUUGAGUAUUACAUCAGGUACUGGUgucgauauuc
..((..(((....)))..))..............................................((((((((((((((...))))))).)))))))

Structure
aagauaaccugcuggugcucacgugucccgaaaagaagAAGAAUGAAAAUCCUGCCCUGUCGGAUU       -       G 
                                                                  GAGUAUU ACAUCAG  
                                                                  ||||||| ||||||| U
                                                                  cuuauag ugUGGUC  
------------------------------------------------------------------       c       A 


Annotation confidence Not enough data
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Genome context
supercont3.57: 562944-563041 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from cqu-mir-12
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cqu-miR-12-5p

Accession MIMAT0014394
Description Culex quinquefasciatus cqu-miR-12-5p mature miRNA
Sequence 39 - AAGAAUGAAAAUCCUGCCCUGUCGGAU - 65
Evidence experimental
Illumina [1]

Mature cqu-miR-12-3p

Accession MIMAT0014395
Description Culex quinquefasciatus cqu-miR-12-3p mature miRNA
Sequence 66 - UGAGUAUUACAUCAGGUACUGGU - 88
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20167119
    Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus
    Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR
    BMC Genomics (2010) 11:119