miRBase entry: cqu-mir-996

Stem-loop cqu-mir-996


Accession
MI0013609
Description
Culex quinquefasciatus cqu-mir-996 precursor miRNA
Gene family
MIPF0000449; mir-996


Sequence

aacucaauuuucgucggcgugcauguaucuggugcacgguuuucaguugcaauauagcuucgUGACUAGAUUACAUGCUCGUcuaugaaguug
....((((((.(((.((((.(((((((((((((.(((((.....(((((.....)))))))))))))))).))))))).)))).)))))))))

Structure
aacu      u   c    u       -      g     uuuuc     c 
    caauuu cgu ggcg gcaugua ucuggu cacgg     aguug a
    |||||| ||| |||| ||||||| |||||| |||||     ||||| a
    guugaa gua cUGC CGUACAU AGAUCA GUgcu     ucgau u
----      -   u    U       U      -     -----     a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
supercont3.19: 1436999-1437091 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from cqu-mir-996
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cqu-miR-996

Accession MIMAT0014419
Description Culex quinquefasciatus cqu-miR-996 mature miRNA
Sequence 63 - UGACUAGAUUACAUGCUCGU - 82
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20167119
    Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus
    Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR
    BMC Genomics (2010) 11:119