Stem-loop sequence cqu-mir-1890

Accession

MI0013615 (change log)

Previous IDs

cqu-mir-1890-1

Description

Culex quinquefasciatus miR-1890 stem-loop

Gene family

MIPF0000848; mir-1890

Literature search

2 open access papers mention cqu-mir-1890
(5 sentences)

Stem-loop

   -          g     ug    c   u   auc  gu 
5'  uacggccaga cuaau  gaga uuc uga   gu  u
    |||||||||| |||||  |||| ||| |||   ||  g
3'  guguuggucu gauua  uucu aag acu   ca  u
   g          g     gu    a   u   -ga  ag 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (CpipJ1): supercont3.64: 982780-982856 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0013615

Mature sequence cqu-miR-1890

• Accession: MIMAT0014427
• Sequence: 50 - ugaaaucuuugauuaggucugg - 71
• Evidence: experimental

References

1. PMID:20167119 "Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus" Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR BMC Genomics. 11:119(2010).