miRBase entry: cqu-mir-79

Stem-loop cqu-mir-79


Accession
MI0013619
Description
Culex quinquefasciatus cqu-mir-79 precursor miRNA
Gene family
MIPF0000014; mir-9


Sequence

ucguccauGCUUUGGCGCUUUAGCUGUAUGAuagaauuuaauauuucauaaagcuagauuaccaaagcauggaag
...((((((((((((...(((((((.(((((..............))))).)))))))...))))))))))))..

Structure
ucg            CGC       G     uagaau 
   uccauGCUUUGG   UUUAGCU UAUGA      u
   ||||||||||||   ||||||| |||||       
   agguacgaaacc   agaucga auacu      u
-ga            auu       a     uuauaa 


Annotation confidence Not enough data
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Genome context
supercont3.83: 80583-80657 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from cqu-mir-79
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cqu-miR-79

Accession MIMAT0014430
Description Culex quinquefasciatus cqu-miR-79 mature miRNA
Sequence 9 - GCUUUGGCGCUUUAGCUGUAUGA - 31
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20167119
    Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus
    Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR
    BMC Genomics (2010) 11:119