miRBase entry: cqu-mir-309

Stem-loop cqu-mir-309


Accession
MI0013631
Description
Culex quinquefasciatus cqu-mir-309 precursor miRNA
Gene family
MIPF0000140; mir-3

Literature search
1 open access papers mention cqu-mir-309
(2 sentences)

Sequence

gcgcucgguuuaugcgucaaacucggcucaguuuggugaacuuugauuugacaUCACUGGGCAUAGUUUGUCGCauaaugauugaaaggca
((..((((((((((((.((((((..(((((((...((.((.......)).))...)))))))..)))))).))))))..))))))...)).

Structure
-  -gc      --      u      cg       uug  g  cu 
 gc   ucgguu  uaugcg caaacu  gcucagu   gu aa  u
 ||   ||||||  |||||| ||||||  |||||||   || ||  u
 cg   aguuag  auaCGC GUUUGA  CGGGUCA   ca uu  g
a  gaa      ua      U      UA       CUa  g  ua 


Annotation confidence Not enough data
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Genome context
supercont3.145: 66026-66116 [-]

Database links

Mature cqu-miR-309

Accession MIMAT0014444
Description Culex quinquefasciatus cqu-miR-309 mature miRNA
Sequence 54 - UCACUGGGCAUAGUUUGUCGC - 74
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20167119
    Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus
    Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR
    BMC Genomics (2010) 11:119