miRBase entry: gga-mir-2954

Stem-loop gga-mir-2954

Accession

MI0013634

Description

Gallus gallus gga-mir-2954 precursor miRNA

Gene family

MIPF0001032; mir-2954

Literature search

6 open access papers mention gga-mir-2954
(46 sentences)

Sequence

200660 reads, 2530 reads per million, 5 experiments

cugagagggcuuggggagaggauuguaguggagcucCAUCCCCAUUCCACUCCUAGCAgcucucuggc
.(.((((((((..(((((.(((.((..((((....))))...)).))).)))))...)))))))).).

Structure

c g        -ug     a   u  -ua    a 
 u agagggcu   gggag gga ug   gugg g
 | ||||||||   ||||| ||| ||   ||||  
 g ucucucgA   UCCUC CCU AC   UACc c
c g        CGA     A   U  CCC    u

Annotation confidence Not enough data

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Genome context

chrZ: 70733043-70733110 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from gga-mir-2954

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature gga-miR-2954

Accession	MIMAT0014448
Description	Gallus gallus gga-miR-2954 mature miRNA
Sequence	37 - CAUCCCCAUUCCACUCCUAGCA - 58
Evidence	experimental Northern [1]
Database links
Predicted targets

References

PubMed ID: 20220842
Somatic sex identity is cell autonomous in the chicken
"Zhao D, McBride D, Nandi S, McQueen HA, McGrew MJ, Hocking PM, Lewis PD, Sang HM, Clinton M"
"Nature (2010) 464:237-242