miRBase entry: tgu-mir-2955

Stem-loop tgu-mir-2955


Accession
MI0013636
Description
Taeniopygia guttata tgu-mir-2955 precursor miRNA

Literature search
0 open access papers mention tgu-mir-2955
(0 sentences)

Sequence

gugcgaguacuuccagcugcuuuagugcaAAGUCCAACAGCUUAGCCUGAauagucuucucugacagcuccagcUAAGCUUCUGGACUUUGCAUCaaaguggcugugcacucacau
(((.((((.(...((((((((((.((((((((((((..((((((((..((...(((......)))...))..))))))))..)))))))))))).)))))))))).).)))).)))

Structure
   c    a uuc          a            AC        CU  aua   uu 
gug gagu c   cagcugcuuu gugcaAAGUCCA  AGCUUAGC  GA   guc  c
||| |||| |   |||||||||| ||||||||||||  ||||||||  ||   |||   
uac cuca g   gucggugaaa UACGUUUCAGGU  UCGAAUcg  cu   cag  u
   a    c --u          C            CU        ac  cga   uc 


Annotation confidence Not enough data
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Genome context
chr1A: 57982665-57982780 [-]

Database links

Mature tgu-miR-2955-3p

Accession MIMAT0014450
Description Taeniopygia guttata tgu-miR-2955-3p mature miRNA
Sequence 75 - UAAGCUUCUGGACUUUGCAUC - 95
Evidence experimental
Illumina [1-2]

Mature tgu-miR-2955-5p

Accession MIMAT0026957
Description Taeniopygia guttata tgu-miR-2955-5p mature miRNA
Sequence 30 - AAGUCCAACAGCUUAGCCUGA - 50
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 20360741
    The genome of a songbird
    "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
    "Nature (2010) 464:757-762

  2. PubMed ID: 23268654
    Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
    Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
    BMC Genomics (2012) 13:727