miRBase entry: tgu-mir-2962

Stem-loop tgu-mir-2962


Accession
MI0013649
Description
Taeniopygia guttata tgu-mir-2962 precursor miRNA


Sequence

gcccugggaaggggAGGAGCGAGGAAGGGGAUGGGAugggcuaaccagggucCAUCCCCUGCCUCUCUUCUCCcuuuccuggggc
(((((((((((((((((((.((((.((((((((((.(((.....)))...)))))))))).)))).)))))))))))))))))))

Structure
                   C    A          --A   g 
gcccugggaaggggAGGAG GAGG AGGGGAUGGG   ugg c
||||||||||||||||||| |||| ||||||||||   ||| u
cgggguccuuucCCUCUUC CUCC UCCCCUACcu   acc a
                   U    G          ggg   a 


Annotation confidence Not enough data
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Genome context
chr17: 6428017-6428101 [+]

Database links

Mature tgu-miR-2962-5p

Accession MIMAT0014462
Description Taeniopygia guttata tgu-miR-2962-5p mature miRNA
Sequence 15 - AGGAGCGAGGAAGGGGAUGGGA - 36
Evidence experimental
454 [1], Illumina [1-2]

Mature tgu-miR-2962-3p

Accession MIMAT0014621
Description Taeniopygia guttata tgu-miR-2962-3p mature miRNA
Sequence 53 - CAUCCCCUGCCUCUCUUCUCC - 73
Evidence experimental
454 [1], Illumina [1-2]

References

  1. PubMed ID: 20360741
    The genome of a songbird
    "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
    "Nature (2010) 464:757-762

  2. PubMed ID: 23268654
    Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
    Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
    BMC Genomics (2012) 13:727