miRBase entry: tgu-mir-1729

Stem-loop tgu-mir-1729


Accession
MI0013654
Description
Taeniopygia guttata tgu-mir-1729 precursor miRNA
Gene family
MIPF0000816; mir-1729


Sequence

gguagacaggccugauccugcAUCCCUUACUCACGUGAGCAGUCgucucuaugucaaagggaCUACUCGGUGAGUAAGGAUCGCaggauugggaccacuacc
(((((...(((((((((((((((((.((((((((.((((.((((.(((.........))))))).)))))))))))))))).))))))))))).)).)))))

Structure
     aca  -           -    C        G    C    g   cua 
gguag   gg ccugauccugc AUCC UUACUCAC UGAG AGUC ucu   u
|||||   || ||||||||||| |||| |||||||| |||| |||| |||   g
ccauc   cc ggguuaggaCG UAGG AAUGAGUG GCUC UCag gga   u
     --a  a           C    -        -    A    -   aac 


Annotation confidence Not enough data
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Genome context
chr15: 8049890-8049991 [-]

Database links

Mature tgu-miR-1729-5p

Accession MIMAT0014467
Description Taeniopygia guttata tgu-miR-1729-5p mature miRNA
Sequence 22 - AUCCCUUACUCACGUGAGCAGUC - 44
Evidence experimental
Illumina [1-2]

Mature tgu-miR-1729-3p

Accession MIMAT0026963
Description Taeniopygia guttata tgu-miR-1729-3p mature miRNA
Sequence 63 - CUACUCGGUGAGUAAGGAUCGC - 84
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 20360741
    The genome of a songbird
    "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
    "Nature (2010) 464:757-762

  2. PubMed ID: 23268654
    Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
    Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
    BMC Genomics (2012) 13:727