Stem-loop tgu-mir-425

Accession

MI0013657

Description

Taeniopygia guttata tgu-mir-425 precursor miRNA

Gene family

MIPF0000242; mir-425

Literature search

1 open access papers mention tgu-mir-425
(1 sentences)

Sequence

gagagauggcuuuggAAUGACACGAUCACUCCCGCUGagccagcagccagagagcCAUCGGGGAUGUCGUGUCUUUccaaagcucuuuc
((((((..(((((((((.(((((((.((.(((((.((.((...(.....)...)))).))))).))))))))).)))))))))))))))

Structure

      ug         U       U  C     C  a  cag a 
gagaga  gcuuuggAA GACACGA CA UCCCG UG gc   c g
||||||  ||||||||| ||||||| || ||||| || ||   | c
cuuucu  cgaaaccUU CUGUGCU GU GGGGC AC cg   g c
      --         U       -  A     U  -  aga a 

Annotation confidence Not enough data

Genome context

chr12: 12254268-12254356 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from tgu-mir-425

Mature tgu-miR-425-5p

• Accession: MIMAT0014470
• Description: Taeniopygia guttata tgu-miR-425-5p mature miRNA
• Sequence: 16 - AAUGACACGAUCACUCCCGCUG - 37
• Evidence: experimental ; 454 [1], Illumina [1-2]

Mature tgu-miR-425-3p

• Accession: MIMAT0014471
• Description: Taeniopygia guttata tgu-miR-425-3p mature miRNA
• Sequence: 56 - CAUCGGGGAUGUCGUGUCUUU - 76
• Evidence: experimental ; 454 [1], Illumina [1-2]

References

1. PubMed ID: 20360741
   The genome of a songbird
   "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
   "Nature (2010) 464:757-762


2. PubMed ID: 23268654
   Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
   Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
   BMC Genomics (2012) 13:727