miRBase entry: tgu-mir-2954

Stem-loop tgu-mir-2954


Accession
MI0013660
Description
Taeniopygia guttata tgu-mir-2954 precursor miRNA
Gene family
MIPF0001032; mir-2954

Literature search
3 open access papers mention tgu-mir-2954
(147 sentences)

Sequence

ggagcaguGCUGAGAGGGCUUGGGGAGAGGAuuguaguggagcucCAUCCCCAUUCCACUCCUAGCAGcucu
(((((..(((((.(((((..((((((..(((..((......))))).))))))..)).))).))))))))))

Structure
     ag     A   -  CU      GA   uu  ag 
ggagc  uGCUG GAG GG  UGGGGA  GGA  gu  u
|||||  ||||| ||| ||  ||||||  |||  ||   
ucucG  ACGAU CUC CC  ACCCCU  Ccu  cg  g
     --     C   A  UU      -A   --  ag 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chrZ: 31606464-31606535 [+]

Database links

Mature tgu-miR-2954-5p

Accession MIMAT0014623
Description Taeniopygia guttata tgu-miR-2954-5p mature miRNA
Sequence 9 - GCUGAGAGGGCUUGGGGAGAGGA - 31
Evidence experimental
454 [1], Illumina [1-2]

Mature tgu-miR-2954-3p

Accession MIMAT0014474
Description Taeniopygia guttata tgu-miR-2954-3p mature miRNA
Sequence 46 - CAUCCCCAUUCCACUCCUAGCAG - 68
Evidence experimental
454 [1], Illumina [1-2]

References

  1. PubMed ID: 20360741
    The genome of a songbird
    "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
    "Nature (2010) 464:757-762

  2. PubMed ID: 23268654
    Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
    Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
    BMC Genomics (2012) 13:727