Stem-loop sequence tgu-mir-2954

AccessionMI0013660 (change log)
DescriptionTaeniopygia guttata miR-2954 stem-loop
Gene family MIPF0001032; mir-2954
Literature search

3 open access papers mention tgu-mir-2954
(140 sentences)

Stem-loop 
        ag     a   -  cu      ga   uu  ag 
5' ggagc  ugcug gag gg  ugggga  gga  gu  u
   |||||  ||||| ||| ||  ||||||  |||  ||   
3' ucucg  acgau cuc cc  accccu  ccu  cg  g
        --     c   a  uu      -a   --  ag
Get sequence
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (taeGlu3.2.4) Overlapping transcripts
chrZ: 31606464-31606535 [+]
sense
ENSTGUT00000001528 ; XPA-201; intron 1
Database links

Mature sequence tgu-miR-2954-5p

Accession MIMAT0014623
Previous IDstgu-miR-2954*
Sequence

9 -  

gcugagagggcuuggggagagga

 - 31

Get sequence
Evidence experimental; 454 [1], Illumina [1-2]

Mature sequence tgu-miR-2954-3p

Accession MIMAT0014474
Previous IDstgu-miR-2954
Sequence

46 -  

cauccccauuccacuccuagcag

 - 68

Get sequence
Evidence experimental; 454 [1], Illumina [1-2]

References

1
PMID:20360741 "The genome of a songbird" Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li Nature. 464:757-762(2010).
2
PMID:23268654 "Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression" Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X BMC Genomics. 13:727(2012).