Stem-loop tgu-mir-460b

Accession

MI0013662

Description

Taeniopygia guttata tgu-mir-460b precursor miRNA

Gene family

MIPF0000134; mir-460

Sequence

ccucuccacuguggcucuaucgugCCCUCAUUGUACAUGCUGUGUGaauuugucacauacACAGCGCAUGCAAUGUGGACAuaauggagcucaauggccaccugagg
((((.(((.((.((((((((.(((.((.(((((((..(((((((((...........)))))))))..))))))).)).))).)))))))))).)))......))))

Structure

    -----u   c  u        c   C  U       CA         aauu 
ccuc      cca ug ggcucuau gug CC CAUUGUA  UGCUGUGUG    u
||||      ||| || |||||||| ||| || |||||||  |||||||||    g
ggag      ggu ac ucgaggua uAC GG GUAACGU  GCGACAcau    u
    uccacc   a  -        a   A  U       AC         acac 

Annotation confidence Not enough data

Genome context

chr4A: 20408530-20408636 [+]

Mature tgu-miR-460b-5p

• Accession: MIMAT0014476
• Description: Taeniopygia guttata tgu-miR-460b-5p mature miRNA
• Sequence: 25 - CCCUCAUUGUACAUGCUGUGUG - 46
• Evidence: experimental ; Illumina [1-2]

Mature tgu-miR-460b-3p

• Accession: MIMAT0014624
• Description: Taeniopygia guttata tgu-miR-460b-3p mature miRNA
• Sequence: 61 - ACAGCGCAUGCAAUGUGGACA - 81
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 20360741
   The genome of a songbird
   "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
   "Nature (2010) 464:757-762


2. PubMed ID: 23268654
   Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
   Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
   BMC Genomics (2012) 13:727