miRBase entry: tgu-mir-2975

Stem-loop tgu-mir-2975


Accession
MI0013671
Description
Taeniopygia guttata tgu-mir-2975 precursor miRNA


Sequence

ggagcacuuaAAAGGAAAGGUGUGGAUCCAUcagagggaagcgggaaucgauggauccauccuuuccuuucaugcugcuuc
(((((((...((((((((((.(((((((((((.((............)))))))))))))))))))))))...).))))))

Structure
      - uua          U           a  gggaa 
ggagca c   AAAGGAAAGG GUGGAUCCAUc ga     g
|||||| |   |||||||||| ||||||||||| ||      
cuucgu g   uuuccuuucc uaccuagguag cu     c
      c uac          -           -  aaggg 


Annotation confidence Not enough data
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Genome context
chr26_random: 475597-475677 [-]

Database links

Mature tgu-miR-2975

Accession MIMAT0014485
Description Taeniopygia guttata tgu-miR-2975 mature miRNA
Sequence 11 - AAAGGAAAGGUGUGGAUCCAU - 31
Evidence experimental
Illumina [1-2]

References

  1. PubMed ID: 20360741
    The genome of a songbird
    "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
    "Nature (2010) 464:757-762

  2. PubMed ID: 23268654
    Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
    Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
    BMC Genomics (2012) 13:727