miRBase entry: tgu-mir-2976-1

Stem-loop tgu-mir-2976-1


Accession
MI0013672
Description
Taeniopygia guttata tgu-mir-2976-1 precursor miRNA
Gene family
MIPF0000893; mir-2976

Literature search
1 open access papers mention tgu-mir-2976-1
(1 sentences)

Sequence

cgugccgugccgugccgugccgugccgugccgugccgugccgugccgugccgcgggagccgcccagcgcgggggccgccggugcggcgggaGCGGAGCGGAGCGGAGCGGGGcgguggcgguggcggcaug
((((((((((((((((((.((((.((((.((((.((((.((.(((((((((((((...((((.....))))...))).)))))))))))).)))).)))).)))).)))).))))).))))).))))))))

Structure
        -     -     g    g    g    g    g  g          -   gag    c 
cgugccgu gccgu gccgu ccgu ccgu ccgu ccgu cc ugccgugccg cgg   ccgc c
|||||||| ||||| ||||| |||| |||| |||| |||| || |||||||||| |||   |||| a
guacggcg uggcg uggcG GGCG GGCG GGCG GGCG gg gcggcguggc gcc   ggcg g
        g     g     G    A    A    A    a  -          c   ggg    c 


Annotation confidence Not enough data
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Genome context
chr28: 2245990-2246120 [-]

Database links

Mature tgu-miR-2976

Accession MIMAT0014486
Description Taeniopygia guttata tgu-miR-2976 mature miRNA
Sequence 92 - GCGGAGCGGAGCGGAGCGGGG - 112
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20360741
    The genome of a songbird
    "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
    "Nature (2010) 464:757-762