miRBase entry: tgu-mir-2983

Stem-loop tgu-mir-2983


Accession
MI0013681
Description
Taeniopygia guttata tgu-mir-2983 precursor miRNA

Literature search
1 open access papers mention tgu-mir-2983
(2 sentences)

Sequence

ccggacuggcuccaucaagccuguuggaacagcaggaaccggccUUUCCAGCAGGCUUGAUGGAGccagucugg
(((((((((((((((((((((((((((((..((........))..)))))))))))))))))))))))))))))

Structure
                             ca  agg 
ccggacuggcuccaucaagccuguuggaa  gc   a
|||||||||||||||||||||||||||||  ||    
ggucugaccGAGGUAGUUCGGACGACCUU  cg   a
                             Uc  gcc 


Annotation confidence Not enough data
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Genome context
chr5: 14115790-14115863 [+]

Database links

Mature tgu-miR-2983

Accession MIMAT0014493
Description Taeniopygia guttata tgu-miR-2983 mature miRNA
Sequence 45 - UUUCCAGCAGGCUUGAUGGAG - 65
Evidence experimental
Illumina [1-2]

References

  1. PubMed ID: 20360741
    The genome of a songbird
    "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
    "Nature (2010) 464:757-762

  2. PubMed ID: 23268654
    Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
    Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
    BMC Genomics (2012) 13:727