miRBase entry: tgu-mir-139

Stem-loop tgu-mir-139


Accession
MI0013689
Description
Taeniopygia guttata tgu-mir-139 precursor miRNA
Gene family
MIPF0000117; mir-139


Sequence

ggccuggcuguauUCUACAGUGCAUGUGUCUCCAGUgugaguaagugacUGGAGAUGCGGCCCUGUUGGAAUaacauccagugcc
(((((((.((((((((((((.((.((((((((((((...........)))))))))))))).))).)))))).))).)))).)))

Structure
   -    c   -      -   U  A            guga 
ggc cugg ugu auUCUA CAG GC UGUGUCUCCAGU    g
||| |||| ||| |||||| ||| || ||||||||||||    u
ccg gacc aca UAAGGU GUC CG GCGUAGAGGUca    a
   u    u   a      U   C  -            guga 


Annotation confidence Not enough data
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Genome context
chr1: 113641295-113641379 [-]

Database links

Mature tgu-miR-139-5p

Accession MIMAT0014500
Description Taeniopygia guttata tgu-miR-139-5p mature miRNA
Sequence 14 - UCUACAGUGCAUGUGUCUCCAGU - 36
Evidence experimental
454 [1], Illumina [1-2]

Mature tgu-miR-139-3p

Accession MIMAT0014626
Description Taeniopygia guttata tgu-miR-139-3p mature miRNA
Sequence 50 - UGGAGAUGCGGCCCUGUUGGAAU - 72
Evidence experimental
454 [1], Illumina [1-2]

References

  1. PubMed ID: 20360741
    The genome of a songbird
    "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
    "Nature (2010) 464:757-762

  2. PubMed ID: 23268654
    Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
    Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
    BMC Genomics (2012) 13:727