miRBase entry: tgu-mir-148a

Stem-loop tgu-mir-148a


Accession
MI0013693
Description
Taeniopygia guttata tgu-mir-148a precursor miRNA
Gene family
MIPF0000056; mir-148


Sequence

ccccggcgccgguaccggcggaggacuggagccuccggaagcAAAGUUCUGUGACACUCCGACUcuggguacgauagcagUCAGUGCACUACAGAACUUUGUcuccggcggc
..((..(((((....)))))..))......(((.(((((.(((((((((((((.((((..(((((((.......))).))))))))...))))))))))))).))))).)))

Structure
ccccggcgccgguaccggcggaggacugga   u     a             --A    CC    -   gg 
                              gcc ccgga gcAAAGUUCUGUG   CACU  GACU cug  u
                              ||| ||||| |||||||||||||   ||||  |||| |||  a
                              cgg ggccu UGUUUCAAGACAU   GUGA  CUga gau  c
------------------------------   c     c             CAC    --    c   ag 


Annotation confidence Not enough data
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Genome context
chr2: 52006663-52006774 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from tgu-mir-148a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature tgu-miR-148a-3p

Accession MIMAT0014503
Description Taeniopygia guttata tgu-miR-148a-3p mature miRNA
Sequence 81 - UCAGUGCACUACAGAACUUUGU - 102
Evidence experimental
454 [1], Illumina [1-2]

Mature tgu-miR-148a-5p

Accession MIMAT0026973
Description Taeniopygia guttata tgu-miR-148a-5p mature miRNA
Sequence 43 - AAAGUUCUGUGACACUCCGACU - 64
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 20360741
    The genome of a songbird
    "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
    "Nature (2010) 464:757-762

  2. PubMed ID: 23268654
    Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
    Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
    BMC Genomics (2012) 13:727