miRBase entry: tgu-let-7b

Stem-loop tgu-let-7b


Accession
MI0013703
Description
Taeniopygia guttata tgu-let-7b precursor miRNA
Gene family
MIPF0000002; let-7

Literature search
1 open access papers mention tgu-let-7b
(1 sentences)

Sequence

ucuaacaggaUGAGGUAGUAGGUUGUGUGGUUucaggguagugauuuugccccaaucaggagauaaCUAUACAACCUACUGCCUUCCcugau
.....((((..(((((((((((((((((((((...((((((.....))))))..(((....)))))))))))))))))))))))).))))..

Structure
ucuaa    aU                     ---------uca      u 
     cagg  GAGGUAGUAGGUUGUGUGGUU            ggguag g
     ||||  |||||||||||||||||||||            |||||| a
     gucC  UUCCGUCAUCCAACAUAUCaa            cccguu u
---ua    -C                     uagaggacuaac      u 


Annotation confidence Not enough data
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Genome context
chr1A: 61564105-61564196 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from tgu-let-7b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature tgu-let-7b-5p

Accession MIMAT0014509
Description Taeniopygia guttata tgu-let-7b-5p mature miRNA
Sequence 11 - UGAGGUAGUAGGUUGUGUGGUU - 32
Evidence experimental
454 [1], Illumina [2]

Mature tgu-let-7b-3p

Accession MIMAT0026975
Description Taeniopygia guttata tgu-let-7b-3p mature miRNA
Sequence 67 - CUAUACAACCUACUGCCUUCC - 87
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 20360741
    The genome of a songbird
    "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
    "Nature (2010) 464:757-762

  2. PubMed ID: 23268654
    Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
    Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
    BMC Genomics (2012) 13:727