miRBase entry: tgu-mir-128-1

Stem-loop tgu-mir-128-1


Accession
MI0013712
Description
Taeniopygia guttata tgu-mir-128-1 precursor miRNA
Gene family
MIPF0000048; mir-128


Sequence

ggauuCGGGGCCGUAACACUGUCUGAgagguuuacauuucUCACAGUGAACCGGUCUCUUUuucagcugcu
(((...(((((((...((((((..(((((((....)))))))))))))...)))))))...))).......

Structure
-------   uuC       UAA      CU       u 
       gga   GGGGCCG   CACUGU  GAgaggu u
       |||   |||||||   ||||||  |||||||  
       cuu   CUCUGGC   GUGACA  CUcuuua a
ucgucga   UUU       CAA      --       c 


Annotation confidence Not enough data
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Genome context
chr7: 33186771-33186841 [+]

Database links

Mature tgu-miR-128-3p

Accession MIMAT0014513
Description Taeniopygia guttata tgu-miR-128-3p mature miRNA
Sequence 41 - UCACAGUGAACCGGUCUCUUU - 61
Evidence experimental
454 [1], Illumina [1-2]

Mature tgu-miR-128-1-5p

Accession MIMAT0031084
Description Taeniopygia guttata tgu-miR-128-1-5p mature miRNA
Sequence 6 - CGGGGCCGUAACACUGUCUGA - 26
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 20360741
    The genome of a songbird
    "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
    "Nature (2010) 464:757-762

  2. PubMed ID: 23268654
    Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
    Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
    BMC Genomics (2012) 13:727