Stem-loop sequence tgu-let-7c-2

AccessionMI0013727 (change log)
DescriptionTaeniopygia guttata let-7c-2 stem-loop
Gene family MIPF0000002; let-7
Literature search

1 open access papers mention tgu-let-7c-2
(1 sentences)

Stem-loop 
   --------  a      uu   g   u             ua  g ua a 
5'         gc uccggg  gag uag agguuguaugguu  ga u  c c
           || ||||||  ||| ||| |||||||||||||  || |  | c
3'         cg agguuc  uuc auc uccaacaugucaa  uu a  g c
   aguucaca  -      cu   g   u             --  g gg u
Get sequence
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (taeGlu3.2.4) Overlapping transcripts
chrUn: 52862184-52862275 [+]
sense
ENSTGUT00000018664 ; tgu-let-7c-1-201; exon 1
Clustered miRNAs
< 10kb from tgu-let-7c-2
tgu-mir-99-2chrUn: 52861469-52861539 [+]
tgu-let-7c-2chrUn: 52862184-52862275 [+]
Database links

Mature sequence tgu-let-7c-5p

Accession MIMAT0014520
Sequence

11 -  

ugagguaguagguuguaugguu

 - 32

Get sequence
Evidence experimental; 454 [1], Illumina [2]

Mature sequence tgu-let-7c-3p

Accession MIMAT0026983
Sequence

56 -  

cuguacaaccuucuagcuuucc

 - 77

Get sequence
Evidence experimental; Illumina [2]

References

1
PMID:20360741 "The genome of a songbird" Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li Nature. 464:757-762(2010).
2
PMID:23268654 "Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression" Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X BMC Genomics. 13:727(2012).