miRBase entry: tgu-mir-218-2

Stem-loop tgu-mir-218-2


Accession
MI0013730
Description
Taeniopygia guttata tgu-mir-218-2 precursor miRNA
Gene family
MIPF0000026; mir-218

Literature search
1 open access papers mention tgu-mir-218-2
(1 sentences)

Sequence

ggguuuuccuUUGUGCUUGAUCUAACCAUGUgguagaacaauacaaauggaacaugguucugucaagcaccauggaaggcugcauacucccugcagcauggcaugccuggauacuucugcuggggcagaag
.((((((((...(((((((((..((((((((....................))))))))..)))))))))...))))))))......(((..(((((...)).)))..)))..(((((((....)))))))

Structure
-------------------------------------------------g        uUU         CU        gguagaaca 
                                                  gguuuucc   GUGCUUGAU  AACCAUGU         a
                                                  ||||||||   |||||||||  ||||||||          
                                                  ucggaagg   cacgaacug  uugguaca         u
gaagacggggucgucuucauagguccguacgguacgacgucccucauacg        uac         uc        agguaaaca 


Annotation confidence Not enough data
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Genome context
chr13: 14950530-14950660 [-]

Database links

Mature tgu-miR-218-5p

Accession MIMAT0014522
Description Taeniopygia guttata tgu-miR-218-5p mature miRNA
Sequence 11 - UUGUGCUUGAUCUAACCAUGU - 31
Evidence experimental
454 [1], Illumina [1-2]

References

  1. PubMed ID: 20360741
    The genome of a songbird
    "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
    "Nature (2010) 464:757-762

  2. PubMed ID: 23268654
    Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
    Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
    BMC Genomics (2012) 13:727