miRBase entry: tgu-mir-1559

Stem-loop tgu-mir-1559


Accession
MI0013738
Description
Taeniopygia guttata tgu-mir-1559 precursor miRNA
Gene family
MIPF0001031; mir-1559


Sequence

caccaagggagcccaggcagcacagagaagguggauucugcacacaaacacucggcgcuguagccguggccgagugugggaugcugaggucuagacuccuUUCGAUGCUUGUAUGCUACUCCcaggaaugcc
..((..(((((..((.((((((..((((.(((((((((.(((..(..(((((((((..((....))..))))))))).)..))).)).)))))....))))))..))).))).))...))))).))......

Structure
----ca  aa     -cc  g   -   ca    a  ----     -  u   ca aa         gc  u 
      cc  gggag   ca gca gca  gaga gg    uggau uc gca  c  acacucggc  ug a
      ||  |||||   || ||| |||  |||| ||    ||||| || |||  |  |||||||||  ||  
      gg  cCCUC   GU UGU CGU  CUUu cc    aucug ag cgu  g  ugugagccg  gc g
ccguaa  -a     AUC  A   U   AG    -  ucag     g  u   ag -g         gu  c 


Annotation confidence Not enough data
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Genome context
chr7: 27262570-27262701 [-]

Database links

Mature tgu-miR-1559

Accession MIMAT0014526
Description Taeniopygia guttata tgu-miR-1559 mature miRNA
Sequence 101 - UUCGAUGCUUGUAUGCUACUCC - 122
Evidence experimental
454 [1], Illumina [2]

References

  1. PubMed ID: 20360741
    The genome of a songbird
    "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
    "Nature (2010) 464:757-762

  2. PubMed ID: 23268654
    Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
    Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
    BMC Genomics (2012) 13:727