miRBase entry: tgu-mir-451

Stem-loop tgu-mir-451


Accession
MI0013747
Description
Taeniopygia guttata tgu-mir-451 precursor miRNA
Gene family
MIPF0000148; mir-451

Literature search
1 open access papers mention tgu-mir-451
(5 sentences)

Sequence

gccggcggggAAACCGUUACCAUUACUGAGUUUaguaaugguaacgguucugccgacggccggcaaggcggca
..(((((((...(((((((((((((((......))))))))))))))))))))))...((((......)))).

Structure
----------------gc       gAA               GA 
                  cggcggg   ACCGUUACCAUUACU  G
                  |||||||   |||||||||||||||   
                  gccgucu   uggcaaugguaauga  U
acggcggaacggccggca       ---               UU 


Annotation confidence Not enough data
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Genome context
chr19: 7265342-7265414 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from tgu-mir-451
Name Accession Chromosome Start End Strand Confidence




Database links

Mature tgu-miR-451

Accession MIMAT0014533
Description Taeniopygia guttata tgu-miR-451 mature miRNA
Sequence 11 - AAACCGUUACCAUUACUGAGUUU - 33
Evidence experimental
454 [1], Illumina [1-2]

References

  1. PubMed ID: 20360741
    The genome of a songbird
    "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
    "Nature (2010) 464:757-762

  2. PubMed ID: 23268654
    Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
    Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
    BMC Genomics (2012) 13:727