Stem-loop tgu-mir-34b

Accession

MI0013751

Description

Taeniopygia guttata tgu-mir-34b precursor miRNA

Gene family

MIPF0000039; mir-34

Literature search

1 open access papers mention tgu-mir-34b
(1 sentences)

Sequence

aaaauuuggggugaaaggcucugccaucagccugguugccAGGCAGUGUAGUUAGCUGAUUGCccaaagcaac
........((((((..((((((((...(.((((((...)))))).).))))..))))..))))))........

Structure

aaaauuug      aa    --    cau a      u 
        ggguga  ggcu  cugc   c gccugg  
        ||||||  ||||  ||||   | |||||| u
        ccCGUU  UCGA  GAUG   G CGGAcc  
caacgaaa      AG    UU    --U A      g 

Annotation confidence Not enough data

Genome context

chr24: 1752148-1752220 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from tgu-mir-34b

Mature tgu-miR-34b

• Accession: MIMAT0014537
• Description: Taeniopygia guttata tgu-miR-34b mature miRNA
• Sequence: 41 - AGGCAGUGUAGUUAGCUGAUUGC - 63
• Evidence: experimental ; 454 [1], Illumina [1-2]

References

1. PubMed ID: 20360741
   The genome of a songbird
   "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
   "Nature (2010) 464:757-762


2. PubMed ID: 23268654
   Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
   Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
   BMC Genomics (2012) 13:727