miRBase entry: tgu-mir-338

Stem-loop tgu-mir-338


Accession
MI0013756
Description
Taeniopygia guttata tgu-mir-338 precursor miRNA
Gene family
MIPF0000097; mir-338


Sequence

agcAACACUAUCCUGAUGCUGUCAgaguaagugguaaagcUCCAGCAUCAGUGAUUUUGUUGuuagugguaa
(((((((..((((((((((((...((((..........))))))))))))).)))..)))))))........

Structure
--------       CU   -         UCA    aagu 
        agcAACA  AUC CUGAUGCUG   gagu    g
        |||||||  ||| |||||||||   ||||     
        uuGUUGU  UAG GACUACGAC   CUcg    g
aaugguga       UU   U         ---    aaau 


Annotation confidence Not enough data
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Genome context
chr14: 14972005-14972076 [-]

Database links

Mature tgu-miR-338-5p

Accession MIMAT0017389
Description Taeniopygia guttata tgu-miR-338-5p mature miRNA
Sequence 4 - AACACUAUCCUGAUGCUGUCA - 24
Evidence experimental
Illumina [2]

Mature tgu-miR-338-3p

Accession MIMAT0014542
Description Taeniopygia guttata tgu-miR-338-3p mature miRNA
Sequence 41 - UCCAGCAUCAGUGAUUUUGUUG - 62
Evidence experimental
454 [1], Illumina [2]

References

  1. PubMed ID: 20360741
    The genome of a songbird
    "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
    "Nature (2010) 464:757-762

  2. PubMed ID: 23268654
    Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
    Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
    BMC Genomics (2012) 13:727