Stem-loop sequence tgu-mir-153-1

AccessionMI0013768 (change log)
DescriptionTaeniopygia guttata miR-153-1 stem-loop
Gene family MIPF0000050; mir-153
Literature search

1 open access papers mention tgu-mir-153-1
(1 sentences)

Stem-loop 
   ----------u              gu       -a  aa 
5'            gucauuuuugugau  ugcagcu  gu  u
              ||||||||||||||  |||||||  ||  a
3'            uagugaaaacacug  acguuga  cg  u
   ucaaagguuac              au       cc  ag
Get sequence
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (taeGlu3.2.4) Overlapping transcripts
chr2: 9797628-9797699 [-]
sense
ENSTGUT00000018248 ; tgu-mir-153-1-201; exon 1
ENSTGUT00000000757 ; PTPRN2-201; intron 7
Database links

Mature sequence tgu-miR-153-1-5p

Accession MIMAT0026997
Sequence

2 -  

gucauuuuugugauguugcagcu

 - 24

Get sequence
Evidence experimental; Illumina [2]

Mature sequence tgu-miR-153-3p

Accession MIMAT0014552
Sequence

41 -  

uugcauagucacaaaagugauc

 - 62

Get sequence
Evidence experimental; 454 [1], Illumina [1-2]

References

1
PMID:20360741 "The genome of a songbird" Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li Nature. 464:757-762(2010).
2
PMID:23268654 "Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression" Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X BMC Genomics. 13:727(2012).