Stem-loop sequence tgu-mir-20a

AccessionMI0013770 (change log)
DescriptionTaeniopygia guttata miR-20a stem-loop
Gene family MIPF0000001; mir-17
Stem-loop 
   cuug   c   -a                 ----g    g 
5'     uag acu  aagugcuuauagugcag     uagu u
       ||| |||  |||||||||||||||||     ||||  
3'     guc uga  uucacgaauauuacguc     auca u
   ----   a   aa                 aucua    c
Get sequence
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (taeGlu3.2.4) Overlapping transcripts
chr1: 43202624-43202696 [-]
sense
ENSTGUT00000018591 ; tgu-mir-20a-201; exon 1
Clustered miRNAs
< 10kb from tgu-mir-20a
tgu-mir-17achr1: 43203076-43203147 [-]
tgu-mir-18achr1: 43202937-43203008 [-]
tgu-mir-19achr1: 43202791-43202860 [-]
tgu-mir-20achr1: 43202624-43202696 [-]
tgu-mir-19b-1chr1: 43202482-43202554 [-]
tgu-mir-92-1chr1: 43202366-43202437 [-]
Database links

Mature sequence tgu-miR-20a-5p

Accession MIMAT0014553
Sequence

11 -  

uaaagugcuuauagugcagguag

 - 33

Get sequence
Evidence experimental; 454 [1], Illumina [1-2]

Mature sequence tgu-miR-20a-3p

Accession MIMAT0026998
Sequence

47 -  

acugcauuauaagcacuuaaagu

 - 69

Get sequence
Evidence experimental; Illumina [2]

References

1
PMID:20360741 "The genome of a songbird" Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li Nature. 464:757-762(2010).
2
PMID:23268654 "Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression" Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X BMC Genomics. 13:727(2012).