miRBase entry: tgu-mir-142

Stem-loop tgu-mir-142


Accession
MI0013771
Description
Taeniopygia guttata tgu-mir-142 precursor miRNA
Gene family
MIPF0000084; mir-142

Literature search
1 open access papers mention tgu-mir-142
(1 sentences)

Sequence

ugcagucaCCCAUAAAGUAGAAAGCACUacuaaacagcacugcaggguGUAGUGUUUCCUACUUUAUGGAu
.........(((((((((((.(((((((((....(.((...)).)...))))))))).)))))))))))..

Structure
ugcagucaC           A         uaaa a  a 
         CCAUAAAGUAG AAGCACUac    c gc  
         ||||||||||| |||||||||    | || c
         GGUAUUUCAUC UUUGUGAUG    g cg  
-------uA           C         -ugg a  u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr19: 468507-468577 [-]

Database links

Mature tgu-miR-142-5p

Accession MIMAT0014554
Description Taeniopygia guttata tgu-miR-142-5p mature miRNA
Sequence 9 - CCCAUAAAGUAGAAAGCACU - 28
Evidence experimental
454 [1], Illumina [1-2]

Mature tgu-miR-142-3p

Accession MIMAT0026999
Description Taeniopygia guttata tgu-miR-142-3p mature miRNA
Sequence 49 - GUAGUGUUUCCUACUUUAUGGA - 70
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 20360741
    The genome of a songbird
    "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
    "Nature (2010) 464:757-762

  2. PubMed ID: 23268654
    Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
    Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
    BMC Genomics (2012) 13:727