Stem-loop sequence tgu-mir-142

AccessionMI0013771 (change log)
DescriptionTaeniopygia guttata miR-142 stem-loop
Gene family MIPF0000084; mir-142
Literature search

1 open access papers mention tgu-mir-142
(1 sentences)

Stem-loop 
   ugcagucac           a         u aa a    
5'          ccauaaaguag aagcacuac a  c gca 
            ||||||||||| ||||||||| |  | || c
3'          gguauuucauc uuugugaug u  g cgu 
   -------ua           c         - gg a
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Confidence Annotation confidence: not enough data
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Genome context
Coordinates (taeGlu3.2.4) Overlapping transcripts
chr19: 468507-468577 [-]
sense
ENSTGUT00000018624 ; tgu-mir-142-201; exon 1
Database links

Mature sequence tgu-miR-142-5p

Accession MIMAT0014554
Sequence

9 -  

cccauaaaguagaaagcacu

 - 28

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Evidence experimental; 454 [1], Illumina [1-2]

Mature sequence tgu-miR-142-3p

Accession MIMAT0026999
Sequence

49 -  

guaguguuuccuacuuuaugga

 - 70

Get sequence
Evidence experimental; Illumina [2]

References

1
PMID:20360741 "The genome of a songbird" Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li Nature. 464:757-762(2010).
2
PMID:23268654 "Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression" Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X BMC Genomics. 13:727(2012).