Stem-loop tgu-mir-140

Accession

MI0013774

Description

Taeniopygia guttata tgu-mir-140 precursor miRNA

Gene family

MIPF0000085; mir-140

Literature search

1 open access papers mention tgu-mir-140
(1 sentences)

Sequence

cguguccugcCAGUGGUUUUACCCUAUGGUAGguuacgucaugcuguucUACCACAGGGUAGAACCACGGAC
...((((.....(((((((((((((.(((((((.((.((...)))).))))))).)))))))))))))))))

Structure

cgu    ugcCA             A       u  c  c 
   gucc     GUGGUUUUACCCU UGGUAGg ua gu  
   ||||     ||||||||||||| ||||||| || || a
   CAGG     CACCAAGAUGGGA ACCAUcu gu cg  
---    -----             C       u  -  u 

Annotation confidence Not enough data

Genome context

chr11: 11805159-11805230 [+]

Mature tgu-miR-140-5p

• Accession: MIMAT0014557
• Description: Taeniopygia guttata tgu-miR-140-5p mature miRNA
• Sequence: 11 - CAGUGGUUUUACCCUAUGGUAG - 32
• Evidence: experimental ; 454 [1], Illumina [1-2]

Mature tgu-miR-140-3p

• Accession: MIMAT0014642
• Description: Taeniopygia guttata tgu-miR-140-3p mature miRNA
• Sequence: 50 - UACCACAGGGUAGAACCACGGAC - 72
• Evidence: experimental ; 454 [1], Illumina [1-2]

References

1. PubMed ID: 20360741
   The genome of a songbird
   "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
   "Nature (2010) 464:757-762


2. PubMed ID: 23268654
   Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
   Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
   BMC Genomics (2012) 13:727