miRBase entry: tgu-mir-1-1

Stem-loop tgu-mir-1-1


Accession
MI0013781
Description
Taeniopygia guttata tgu-mir-1-1 precursor miRNA
Gene family
MIPF0000038; mir-1

Literature search
1 open access papers mention tgu-mir-1-1
(3 sentences)

Sequence

gACAUACUUCUUUAUAUGCCCAUAugaaccuggcaagcuaUGGAAUGUAAAGAAGUAUGUAUuucagguggg
.((((((((((((((((..(((((..............))))).))))))))))))))))............

Structure
-----------g                GC     ugaacc 
            ACAUACUUCUUUAUAU  CCAUA      u
            ||||||||||||||||  |||||       
            UGUAUGAAGAAAUGUA  GGUau      g
ggguggacuuUA                -A     cgaacg 


Annotation confidence Not enough data
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Genome context
chr20: 10493672-10493743 [-]

Database links

Mature tgu-miR-1-3p

Accession MIMAT0014562
Description Taeniopygia guttata tgu-miR-1-3p mature miRNA
Sequence 41 - UGGAAUGUAAAGAAGUAUGUAU - 62
Evidence experimental
454 [1], Illumina [1-2]

Mature tgu-miR-1-1-5p

Accession MIMAT0031087
Description Taeniopygia guttata tgu-miR-1-1-5p mature miRNA
Sequence 2 - ACAUACUUCUUUAUAUGCCCAUA - 24
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 20360741
    The genome of a songbird
    "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
    "Nature (2010) 464:757-762

  2. PubMed ID: 23268654
    Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
    Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
    BMC Genomics (2012) 13:727