miRBase entry: tgu-mir-219a

Stem-loop tgu-mir-219a

Accession

MI0013789

Description

Taeniopygia guttata tgu-mir-219a precursor miRNA

Gene family

MIPF0000044; mir-219

Literature search

1 open access papers mention tgu-mir-219a
(1 sentences)

Sequence

ucuccgcuccUGAUUGUCCAAACGCAAUUCUUgugcgauggagccguacgaaccaagaauugugucuggaca
..............((((((.((((((((((((..(((((....))).))...)))))))))))).))))))

Structure

ucuccgcuccUGAU      A            -ug  -   g 
              UGUCCA ACGCAAUUCUUg   cg aug a
              |||||| ||||||||||||   || |||  
              acaggu uguguuaagaac   gc ugc g
--------------      c            caa  a   c

Annotation confidence Not enough data

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Genome context

chr17: 5454954-5455025 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from tgu-mir-219a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature tgu-miR-219a

Accession	MIMAT0014568
Description	Taeniopygia guttata tgu-miR-219a mature miRNA
Sequence	11 - UGAUUGUCCAAACGCAAUUCUU - 32
Evidence	experimental 454 [1], Illumina [1]

References

PubMed ID: 20360741
The genome of a songbird
"Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
"Nature (2010) 464:757-762