miRBase entry: tgu-mir-375

Stem-loop tgu-mir-375


Accession
MI0013798
Description
Taeniopygia guttata tgu-mir-375 precursor miRNA
Gene family
MIPF0000114; mir-375


Sequence

ccuggcgucgagccccacgugcaauaccugaccugaacguUUUGUUCGUUCGGCUCGCGUUAggcaggucca
(((((((.((((((..(((.((((.((...........)).)))).)))..)))))))))))))........

Structure
--------       u      cc   u    u  cuga 
        ccuggcg cgagcc  acg gcaa ac    c
        ||||||| ||||||  ||| |||| ||    c
        ggAUUGC GCUCGG  UGC UGUU ug    u
accuggac       -      CU   U    U  caag 


Annotation confidence Not enough data
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Genome context
chr7: 10362273-10362344 [-]

Database links

Mature tgu-miR-375

Accession MIMAT0014572
Description Taeniopygia guttata tgu-miR-375 mature miRNA
Sequence 41 - UUUGUUCGUUCGGCUCGCGUUA - 62
Evidence experimental
454 [1], Illumina [1-2]

References

  1. PubMed ID: 20360741
    The genome of a songbird
    "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
    "Nature (2010) 464:757-762

  2. PubMed ID: 23268654
    Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
    Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
    BMC Genomics (2012) 13:727