miRBase entry: tgu-mir-92-1

Stem-loop tgu-mir-92-1


Accession
MI0013800
Description
Taeniopygia guttata tgu-mir-92-1 precursor miRNA
Gene family
MIPF0000013; mir-25

Literature search
3 open access papers mention tgu-mir-92-1
(9 sentences)

Sequence

cacAGGUUGGGAUCAGUUGCAAUGCUgugugugucuguggUAUUGCACUUGUCCCGGCCUGUugagguuggu
.((((((((((((.(((.((((((((............))))))))))).))))))))))))..........

Structure
---------c            C   U        gugug 
          acAGGUUGGGAU AGU GCAAUGCU     u
          |||||||||||| ||| ||||||||      
          UGUCCGGCCCUG UCA CGUUAUgg     g
ugguuggagu            U   -        ugucu 


Annotation confidence Not enough data
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Genome context
chr1: 43202366-43202437 [-]
Clustered miRNAs
5 other miRNAs are < 10 kb from tgu-mir-92-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature tgu-miR-92-3p

Accession MIMAT0014574
Description Taeniopygia guttata tgu-miR-92-3p mature miRNA
Sequence 41 - UAUUGCACUUGUCCCGGCCUGU - 62
Evidence experimental
454 [1], Illumina [1-2]

Mature tgu-miR-92-1-5p

Accession MIMAT0027007
Description Taeniopygia guttata tgu-miR-92-1-5p mature miRNA
Sequence 4 - AGGUUGGGAUCAGUUGCAAUGCU - 26
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 20360741
    The genome of a songbird
    "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
    "Nature (2010) 464:757-762

  2. PubMed ID: 23268654
    Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
    Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
    BMC Genomics (2012) 13:727