miRBase entry: tgu-mir-130b

Stem-loop tgu-mir-130b


Accession
MI0013805
Description
Taeniopygia guttata tgu-mir-130b precursor miRNA
Gene family
MIPF0000034; mir-130


Sequence

cccccagcccggcagccgccgcagcugcugugccagcgcugggaccaccggccgggcugccCCUCUUUCCCUGUUGCACUACUgucacggucgcagcgagCAGUGCAAUAAUGAAAGGGCGUcagugcgccg
....(((((((((.....((.((((.((((...)))))))))).......))))))))).....(((((..(((((((((.((((..(....)..)).)).)))))))))..)))))(((((....))))).

Structure
cccccagcccggcagccgccgcagcugcugugccagcgcugggaccaccggccgggcugccCCU     CC         A  -  ca g 
                                                                CUUUC  UGUUGCACU CU gu  c g
                                                                |||||  ||||||||| || ||  |  
                                                                GAAAG  AUAACGUGA ga cg  g u
-------------------------------------------------gccgcgugacUGCGG     UA         C  g  ac c 


Annotation confidence Not enough data
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Genome context
chr15: 8487921-8488052 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from tgu-mir-130b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature tgu-miR-130b-5p

Accession MIMAT0014646
Description Taeniopygia guttata tgu-miR-130b-5p mature miRNA
Sequence 62 - CCUCUUUCCCUGUUGCACUACU - 83
Evidence experimental
454 [1], Illumina [2]

Mature tgu-miR-130b-3p

Accession MIMAT0014578
Description Taeniopygia guttata tgu-miR-130b-3p mature miRNA
Sequence 101 - CAGUGCAAUAAUGAAAGGGCGU - 122
Evidence experimental
454 [1], Illumina [2]

References

  1. PubMed ID: 20360741
    The genome of a songbird
    "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
    "Nature (2010) 464:757-762

  2. PubMed ID: 23268654
    Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
    Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
    BMC Genomics (2012) 13:727