miRBase entry: tgu-mir-106

Stem-loop tgu-mir-106


Accession
MI0013818
Description
Taeniopygia guttata tgu-mir-106 precursor miRNA
Gene family
MIPF0000001; mir-17

Literature search
1 open access papers mention tgu-mir-106
(1 sentences)

Sequence

caaguugugcAAAAGUGCUUACAGUGCAGGUAGaguucaggaucuACUGCAGUUUAAGCACUUCUGGcauuac
...((.((((..(((((((((.(.(((((.((((........))))))))).).)))))))))...)))).))

Structure
caa  u    -AA         C G     G    guu 
   gu gugc   AAGUGCUUA A UGCAG UAGa   c
   || ||||   ||||||||| | ||||| ||||    
   ca uacG   UUCACGAAU U ACGUC Aucu   a
---  u    GUC         U G     -    agg 


Annotation confidence Not enough data
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Genome context
chr4A: 7273746-7273818 [+]
Clustered miRNAs
5 other miRNAs are < 10 kb from tgu-mir-106
Name Accession Chromosome Start End Strand Confidence




Database links

Mature tgu-miR-106-5p

Accession MIMAT0014590
Description Taeniopygia guttata tgu-miR-106-5p mature miRNA
Sequence 11 - AAAAGUGCUUACAGUGCAGGUAG - 33
Evidence experimental
454 [1], Illumina [2]

Mature tgu-miR-106-3p

Accession MIMAT0027016
Description Taeniopygia guttata tgu-miR-106-3p mature miRNA
Sequence 46 - ACUGCAGUUUAAGCACUUCUGG - 67
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 20360741
    The genome of a songbird
    "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
    "Nature (2010) 464:757-762

  2. PubMed ID: 23268654
    Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
    Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
    BMC Genomics (2012) 13:727