Stem-loop sequence tgu-mir-106

Accession

MI0013818 (change log)

Description

Taeniopygia guttata miR-106 stem-loop

Gene family

MIPF0000001; mir-17

Literature search

1 open access papers mention tgu-mir-106
(1 sentences)

Stem-loop

   caa  u    -aa         c g     g    guu 
5'    gu gugc   aagugcuua a ugcag uaga   c
      || ||||   ||||||||| | ||||| ||||    
3'    ca uacg   uucacgaau u acguc aucu   a
   ---  u    guc         u g     -    agg 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (taeGlu3.2.4): chr4A: 7273746-7273818 [+]
• Overlapping transcripts:

  sense

  ENSTGUT00000018470 ; tgu-mir-106-201; exon 1

Clustered miRNAs

< 10kb from tgu-mir-106

• tgu-mir-106: chr4A: 7273746-7273818 [+]
• tgu-mir-18b: chr4A: 7273805-7273936 [+]
• tgu-mir-20b: chr4A: 7274092-7274164 [+]
• tgu-mir-19b-2: chr4A: 7274224-7274296 [+]
• tgu-mir-92-2: chr4A: 7274404-7274495 [+]
• tgu-mir-363: chr4A: 7274550-7274638 [+]

Database links

• miRBase Tracker:MI0013818

Mature sequence tgu-miR-106-5p

• Accession: MIMAT0014590
• Sequence: 11 - aaaagugcuuacagugcagguag - 33
• Evidence: experimental; 454 [1], Illumina [2]

Mature sequence tgu-miR-106-3p

• Accession: MIMAT0027016
• Sequence: 46 - acugcaguuuaagcacuucugg - 67
• Evidence: experimental; Illumina [2]

References

1. PMID:20360741 "The genome of a songbird" Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li Nature. 464:757-762(2010).
2. PMID:23268654 "Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression" Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X BMC Genomics. 13:727(2012).