Stem-loop sequence tgu-mir-144

Accession

MI0013824 (change log)

Description

Taeniopygia guttata miR-144 stem-loop

Gene family

MIPF0000093; mir-144

Literature search

1 open access papers mention tgu-mir-144
(1 sentences)

Stem-loop

   --  -a  -----        g         -a   ggc 
5'   gc  gg     auaucauc uauacugua  guu   u
     ||  ||     |||||||| |||||||||  |||    
3'   cg  cc     uguaguag auaugacau  cag   a
   gu  gg  ccuca        -         ca   agu 

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (taeGlu3.2.4): chr19: 7265533-7265602 [-]
• Overlapping transcripts:

  sense

  ENSTGUT00000018434 ; tgu-mir-144-201; exon 1

Clustered miRNAs

< 10kb from tgu-mir-144

• tgu-mir-144: chr19: 7265533-7265602 [-]
• tgu-mir-451: chr19: 7265342-7265414 [-]

Database links

• miRBase Tracker:MI0013824

Mature sequence tgu-miR-144-5p

• Accession: MIMAT0014650
• Previous IDs: tgu-miR-144*
• Sequence: 4 - ggauaucaucguauacuguaagu - 26
• Evidence: experimental; 454 [1], Illumina [2]

Mature sequence tgu-miR-144-3p

• Accession: MIMAT0014596
• Previous IDs: tgu-miR-144
• Sequence: 41 - uacaguauagaugauguacu - 60
• Evidence: experimental; 454 [1], Illumina [2]

References

1. PMID:20360741 "The genome of a songbird" Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li Nature. 464:757-762(2010).
2. PMID:23268654 "Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression" Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X BMC Genomics. 13:727(2012).