miRBase entry: tgu-mir-144

Stem-loop tgu-mir-144


Accession
MI0013824
Description
Taeniopygia guttata tgu-mir-144 precursor miRNA
Gene family
MIPF0000093; mir-144

Literature search
1 open access papers mention tgu-mir-144
(1 sentences)

Sequence

gcaGGAUAUCAUCGUAUACUGUAAGUuggcuaugagacacUACAGUAUAGAUGAUGUACUccccgggcug
((.((((((((((.(((((((((.(((........)))..))))))))))))))))).....))..))..

Structure
--  -a  -----        G         -A   ggc 
  gc  GG     AUAUCAUC UAUACUGUA  GUu   u
  ||  ||     |||||||| |||||||||  |||    
  cg  cc     UGUAGUAG AUAUGACAU  cag   a
gu  gg  ccUCA        -         ca   agu 


Annotation confidence Not enough data
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Genome context
chr19: 7265533-7265602 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from tgu-mir-144
Name Accession Chromosome Start End Strand Confidence




Database links

Mature tgu-miR-144-5p

Accession MIMAT0014650
Description Taeniopygia guttata tgu-miR-144-5p mature miRNA
Sequence 4 - GGAUAUCAUCGUAUACUGUAAGU - 26
Evidence experimental
454 [1], Illumina [2]

Mature tgu-miR-144-3p

Accession MIMAT0014596
Description Taeniopygia guttata tgu-miR-144-3p mature miRNA
Sequence 41 - UACAGUAUAGAUGAUGUACU - 60
Evidence experimental
454 [1], Illumina [2]

References

  1. PubMed ID: 20360741
    The genome of a songbird
    "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
    "Nature (2010) 464:757-762

  2. PubMed ID: 23268654
    Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
    Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
    BMC Genomics (2012) 13:727