miRBase entry: tgu-mir-15b

Stem-loop tgu-mir-15b


Accession
MI0013825
Description
Taeniopygia guttata tgu-mir-15b precursor miRNA
Gene family
MIPF0000006; mir-15


Sequence

cgaagugcugUAGCAGCACAUCAUGGUUUGCaugcucugcucagggugCAAAUCAUGAUUUGCUGCUGUag
.......(((((((((((.((((((((((((((.((......)).)))))))))))))).)))))))))))

Structure
cgaagug           C              g  cu 
       cugUAGCAGCA AUCAUGGUUUGCau cu  g
       ||||||||||| |||||||||||||| ||   
       gaUGUCGUCGU UAGUACUAAACgug ga  c
-------           U              g  cu 


Annotation confidence Not enough data
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Genome context
chr9: 25555991-25556061 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from tgu-mir-15b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature tgu-miR-15b-5p

Accession MIMAT0014597
Description Taeniopygia guttata tgu-miR-15b-5p mature miRNA
Sequence 11 - UAGCAGCACAUCAUGGUUUGC - 31
Evidence experimental
454 [1], Illumina [1-2]

Mature tgu-miR-15b-3p

Accession MIMAT0027020
Description Taeniopygia guttata tgu-miR-15b-3p mature miRNA
Sequence 49 - CAAAUCAUGAUUUGCUGCUGU - 69
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 20360741
    The genome of a songbird
    "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
    "Nature (2010) 464:757-762

  2. PubMed ID: 23268654
    Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
    Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
    BMC Genomics (2012) 13:727