miRBase entry: tgu-mir-223

Stem-loop tgu-mir-223


Accession
MI0013827
Description
Taeniopygia guttata tgu-mir-223 precursor miRNA
Gene family
MIPF0000067; mir-223


Sequence

guguauuugacaagcugaguccgacacucagugugcagagUGUCAGUUUGUCAAAUACCCCaagugaggca
..((((((((((((((......(((((((........))))))))))))))))))))).............

Structure
-----------gu              gagucc       agu 
             guauuugacaagcu      gacacuc   g
             ||||||||||||||      |||||||    
             CAUAAACUGUUUGA      CUGUgag   u
acggagugaaCCC              ------       acg 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr4A: 6644931-6645001 [-]

Database links

Mature tgu-miR-223

Accession MIMAT0014599
Description Taeniopygia guttata tgu-miR-223 mature miRNA
Sequence 41 - UGUCAGUUUGUCAAAUACCCC - 61
Evidence experimental
454 [1], Illumina [1-2]

References

  1. PubMed ID: 20360741
    The genome of a songbird
    "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
    "Nature (2010) 464:757-762

  2. PubMed ID: 23268654
    Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
    Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
    BMC Genomics (2012) 13:727