miRBase entry: tgu-mir-29b-2

Stem-loop tgu-mir-29b-2


Accession
MI0013831
Description
Taeniopygia guttata tgu-mir-29b-2 precursor miRNA
Gene family
MIPF0000009; mir-29


Sequence

cUGGUUUCACAUGGUGGCUUAGAuuuucccacuuuguaucUAGCACCAUUUGAAAUCAGUGuucuaggagc
(((((((((.((((((.((.((((.............)))))))))))).))))))))).((((...))))

Structure
------------         C      G  U    uuucc 
            cUGGUUUCA AUGGUG CU AGAu     c
            ||||||||| |||||| || ||||     a
            GACUAAAGU UACCAC GA Ucua     c
cgaggaucuuGU         U      -  -    uguuu 


Annotation confidence Not enough data
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Genome context
chr26: 3760396-3760466 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from tgu-mir-29b-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature tgu-miR-29b-3p

Accession MIMAT0014601
Description Taeniopygia guttata tgu-miR-29b-3p mature miRNA
Sequence 41 - UAGCACCAUUUGAAAUCAGUG - 61
Evidence experimental
454 [1], Illumina [1-2]

Mature tgu-miR-29b-2-5p

Accession MIMAT0014651
Description Taeniopygia guttata tgu-miR-29b-2-5p mature miRNA
Sequence 2 - UGGUUUCACAUGGUGGCUUAGA - 23
Evidence experimental
454 [1], Illumina [1-2]

References

  1. PubMed ID: 20360741
    The genome of a songbird
    "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
    "Nature (2010) 464:757-762

  2. PubMed ID: 23268654
    Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
    Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
    BMC Genomics (2012) 13:727