Stem-loop tgu-mir-146b

Accession

MI0013832

Description

Taeniopygia guttata tgu-mir-146b precursor miRNA

Gene family

MIPF0000103; mir-146

Sequence

ugcuuggcucUGAGAACUGAAUUCCAUAGGCGuugaagccuccaaaaUGCCCUAUGGAUUCAGUUCUGCagc
.........(((((((((((((.(((((((((((...........)))).))))))))))))))))).))).

Structure

ugcuuggcu   -          U       -    gaag 
         cUG AGAACUGAAU CCAUAGG CGuu    c
         ||| |||||||||| ||||||| ||||    c
         gaC UCUUGACUUA GGUAUCC GUaa    u
--------c   G          -       C    aacc 

Annotation confidence Not enough data

Genome context

chr6: 22623576-22623647 [+]

Mature tgu-miR-146b-5p

• Accession: MIMAT0014602
• Description: Taeniopygia guttata tgu-miR-146b-5p mature miRNA
• Sequence: 11 - UGAGAACUGAAUUCCAUAGGCG - 32
• Evidence: experimental ; 454 [1], Illumina [2]

Mature tgu-miR-146b-3p

• Accession: MIMAT0014652
• Description: Taeniopygia guttata tgu-miR-146b-3p mature miRNA
• Sequence: 48 - UGCCCUAUGGAUUCAGUUCUGC - 69
• Evidence: experimental ; 454 [1], Illumina [2]

References

1. PubMed ID: 20360741
   The genome of a songbird
   "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
   "Nature (2010) 464:757-762


2. PubMed ID: 23268654
   Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
   Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
   BMC Genomics (2012) 13:727