Stem-loop sequence tgu-mir-19a

AccessionMI0013841 (change log)
DescriptionTaeniopygia guttata miR-19a stem-loop
Gene family MIPF0000011; mir-19
Stem-loop 
   ----                 --      u  aagaa 
5'     cuguuaguuuugcauag  uugcac ac     g
       |||||||||||||||||  |||||| ||      
3'     gguagucgaaacguauc  aacgug ug     a
   cggu                 ua      u  gugag
Get sequence
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (taeGlu3.2.4) Overlapping transcripts
chr1: 43202791-43202860 [-]
sense
ENSTGUT00000018342 ; tgu-mir-19a-201; exon 1
Clustered miRNAs
< 10kb from tgu-mir-19a
tgu-mir-17achr1: 43203076-43203147 [-]
tgu-mir-18achr1: 43202937-43203008 [-]
tgu-mir-19achr1: 43202791-43202860 [-]
tgu-mir-20achr1: 43202624-43202696 [-]
tgu-mir-19b-1chr1: 43202482-43202554 [-]
tgu-mir-92-1chr1: 43202366-43202437 [-]
Database links

Mature sequence tgu-miR-19a-5p

Accession MIMAT0027023
Sequence

5 -  

uaguuuugcauaguugcacu

 - 24

Get sequence
Evidence experimental; Illumina [2]

Mature sequence tgu-miR-19a-3p

Accession MIMAT0014611
Sequence

41 -  

ugugcaaaucuaugcaaagc

 - 60

Get sequence
Evidence experimental; 454 [1], Illumina [2]

References

1
PMID:20360741 "The genome of a songbird" Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li Nature. 464:757-762(2010).
2
PMID:23268654 "Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression" Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X BMC Genomics. 13:727(2012).