miRBase entry: tgu-mir-19a

Stem-loop tgu-mir-19a


Accession
MI0013841
Description
Taeniopygia guttata tgu-mir-19a precursor miRNA
Gene family
MIPF0000011; mir-19


Sequence

cuguUAGUUUUGCAUAGUUGCACUacaagaagagagugguUGUGCAAAUCUAUGCAAAGCugaugguggc
(((((((((((((((((((((((.((............)).))))))..)))))))))))))))))....

Structure
----                 --      U  aagaa 
    cuguUAGUUUUGCAUAG  UUGCAC ac     g
    |||||||||||||||||  |||||| ||      
    gguaguCGAAACGUAUC  AACGUG ug     a
cggu                 UA      U  gugag 


Annotation confidence Not enough data
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Genome context
chr1: 43202791-43202860 [-]
Clustered miRNAs
5 other miRNAs are < 10 kb from tgu-mir-19a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature tgu-miR-19a-3p

Accession MIMAT0014611
Description Taeniopygia guttata tgu-miR-19a-3p mature miRNA
Sequence 41 - UGUGCAAAUCUAUGCAAAGC - 60
Evidence experimental
454 [1], Illumina [2]

Mature tgu-miR-19a-5p

Accession MIMAT0027023
Description Taeniopygia guttata tgu-miR-19a-5p mature miRNA
Sequence 5 - UAGUUUUGCAUAGUUGCACU - 24
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 20360741
    The genome of a songbird
    "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
    "Nature (2010) 464:757-762

  2. PubMed ID: 23268654
    Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
    Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
    BMC Genomics (2012) 13:727