miRBase entry: bmo-mir-2733f

Stem-loop bmo-mir-2733f


Accession
MI0013856
Description
Bombyx mori bmo-mir-2733f precursor miRNA
Gene family
MIPF0000766; mir-2733

Literature search
1 open access papers mention bmo-mir-2733f
(8 sentences)

Sequence

3 reads, 1 reads per million, 1 experiments
acgucuacauugcuaaucugucuauaaaagacaguuauuacuaacucgguagacacgucacugugUCACUGGGUAUGUAAUGACAGUcguugauagauaaucgcgucguaccaaacgu
((((.(((..(((.....(((((((....(((.((((((((..(((((((.(((((......))))))))))))..)))))))).)))....)))))))...)))..)))....))))

Structure
    ---c   au   uaauc       aaaa   a        ua       a     gu 
acgu    uac  ugc     ugucuau    gac guuauuac  acucggu gacac  c
||||    |||  |||     |||||||    ||| ||||||||  ||||||| |||||   
ugca    aug  gcg     auagaua    cUG CAGUAAUG  UGGGUCA CUgug  a
    aacc   cu   --cua       guug   A        UA       -     uc 


Annotation confidence Not enough data
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Genome context
NW_004581684.1: 346080-346197 [-]
Clustered miRNAs
14 other miRNAs are < 10 kb from bmo-mir-2733f
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bmo-miR-2733f

Accession MIMAT0014661
Description Bombyx mori bmo-miR-2733f mature miRNA
Sequence 66 - UCACUGGGUAUGUAAUGACAGU - 87
Evidence experimental
Illumina [1], SOLID [2]

References

  1. PubMed ID: 20229201
    Novel microRNAs in silkworm (Bombyx mori)
    "Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J"
    "Funct Integr Genomics (2010) 10:405-415

  2. PubMed ID: 20089182
    Deep sequencing of small RNA libraries reveals dynamic regulation of conserved and novel microRNAs and microRNA-stars during silkworm development
    Jagadeeswaran G, Zheng Y, Sumathipala N, Jiang H, Arrese EL, Soulages JL, Zhang W, Sunkar R
    BMC Genomics (2010) 11:52