miRBase entry: bmo-mir-3001

Stem-loop bmo-mir-3001


Accession
MI0013861
Description
Bombyx mori bmo-mir-3001 precursor miRNA

Literature search
1 open access papers mention bmo-mir-3001
(1 sentences)

Sequence

1849 reads, 64 reads per million, 3 experiments
guaugugauucagaugcguuUAAGUUGAAAGAAUUGUAGAUUUUGAuuccguuuucgccaauaaaauucagcagaauugauauuuuucuuuugucuuuggcgucaucaaggccauuagc
............((((((((.(((..(((((((..((((((((((......(((........)))......)))))))..)))..)))))))..))).)))).))))............

Structure
guaugugauuca    -    U   UU       UU   --       Auuccg   ucg 
            gaug cguu AAG  GAAAGAA  GUA  GAUUUUG      uuu   c
            |||| |||| |||  |||||||  |||  |||||||      |||    
            cuac gcgg uuc  uuuucuu  uau  uuaagac      aaa   c
cgauuaccggaa    u    u   ug       uu   ag       gacuua   uaa 


Annotation confidence Not enough data
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Genome context
NW_004581686.1: 3139673-3139791 [-]

Database links

Mature bmo-miR-3001

Accession MIMAT0014665
Description Bombyx mori bmo-miR-3001 mature miRNA
Sequence 21 - UAAGUUGAAAGAAUUGUAGAUUUUGA - 46
Evidence experimental
Illumina [1]
Database links

References

  1. PubMed ID: 20089182
    Deep sequencing of small RNA libraries reveals dynamic regulation of conserved and novel microRNAs and microRNA-stars during silkworm development
    Jagadeeswaran G, Zheng Y, Sumathipala N, Jiang H, Arrese EL, Soulages JL, Zhang W, Sunkar R
    BMC Genomics (2010) 11:52