Stem-loop api-mir-100

Accession

MI0013878

Description

Acyrthosiphon pisum api-mir-100 precursor miRNA

Literature search

3 open access papers mention api-mir-100
(11 sentences)

Sequence

ugugaaaacugaguugcuacGACCCGUAGAUCCGAACUUGUGucgcaaaguuuaguaucacaaguucguuucuagaggauacagccacucagugcacuc
.(((...(((((((.(((....((..((((..((((((((((..((........))..))))))))))..))))..))....))).))))))).)))..

Structure

-u   aaa       u   acGA  CG    UC          uc  aaa 
  gug   acugagu gcu    CC  UAGA  CGAACUUGUG  gc   g
  |||   ||||||| |||    ||  ||||  ||||||||||  ||    
  cac   ugacuca cga    gg  aucu  gcuugaacac  ug   u
cu   --g       c   caua  ag    uu          ua  auu 

Annotation confidence Low

Genome context

GL350266.1: 135163-135261 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from api-mir-100

Mature api-miR-100

• Accession: MIMAT0014687
• Description: Acyrthosiphon pisum api-miR-100 mature miRNA
• Sequence: 21 - GACCCGUAGAUCCGAACUUGUG - 42
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 20444247
   Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum
   Legeai F, Rizk G, Walsh T, Edwards O, Gordon K, Lavenier D, Leterme N, Méreau A, Nicolas J, Tagu D, Jaubert-Possamai S
   BMC Genomics (2010) 11:281