miRBase entry: api-mir-13a

Stem-loop api-mir-13a


Accession
MI0013912
Description
Acyrthosiphon pisum api-mir-13a precursor miRNA
Gene family
MIPF0000049; mir-2

Literature search
1 open access papers mention api-mir-13a
(1 sentences)

Sequence

ccgucaaaauggaugugaagugguuuuuuuuacuauucaUAUCACAGCCACUUUGAUGAGC
.(((((((.(((.(((((((((((.......))))))....))))).))).)))))))...

Structure
--c       a   a     ----      uu 
   cgucaaa ugg uguga    aguggu  u
   ||||||| ||| |||||    ||||||  u
   GUAGUUU ACC ACACU    uuauca  u
CGA       C   G     AUac      uu 


Annotation confidence Not enough data
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Genome context
GL349742.1: 367742-367802 [+]
Clustered miRNAs
4 other miRNAs are < 10 kb from api-mir-13a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature api-miR-13a

Accession MIMAT0014713
Description Acyrthosiphon pisum api-miR-13a mature miRNA
Sequence 40 - UAUCACAGCCACUUUGAUGAGC - 61
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20444247
    Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum
    Legeai F, Rizk G, Walsh T, Edwards O, Gordon K, Lavenier D, Leterme N, Méreau A, Nicolas J, Tagu D, Jaubert-Possamai S
    BMC Genomics (2010) 11:281